Package: rtrees 1.0.3

rtrees: Deriving Phylogenies from Synthesis Trees

To facilitate generating phylogenies from synthesis trees.

Authors:Daijiang Li [aut, cre]

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rtrees.pdf |rtrees.html✨
rtrees/json (API)

# Install 'rtrees' in R:
install.packages('rtrees', repos = c('https://daijiang.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/daijiang/rtrees/issues

Pkgdown site:https://daijiang.github.io

Datasets:

On CRAN:

phylogenetic-trees

5.64 score 31 stars 71 scripts 7 exports 45 dependencies

Last updated 8 months agofrom:dde573355d. Checks:1 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 15 2025
R-4.5-winNOTEJan 15 2025
R-4.5-linuxNOTEJan 15 2025
R-4.4-winNOTEJan 15 2025
R-4.4-macNOTEJan 15 2025
R-4.3-winNOTEJan 15 2025
R-4.3-macNOTEJan 15 2025

Exports:add_root_infobind_tipget_graft_statusget_one_treeget_treerm_starssp_list_df

Dependencies:apecastorclicodetoolscpp11data.tabledigestdplyrfansifastmatchfsfurrrfuturegenericsglobalsgluejsonlitelatticelazyevallifecyclelistenvmagrittrMatrixmegatreesnaturalsortnlmeparallellypillarpkgconfigpurrrR6RcppRcppEigenrlangRSpectrastringistringrtibbletidyrtidyselecttidytreeutf8vctrswithryulab.utils

Grafting Scenarios

Rendered fromgrafting_scenarios.Rmdusingknitr::rmarkdownon Jan 15 2025.

Last update: 2023-01-10
Started: 2023-01-10

Non-monophyletic genera

Rendered fromNon-monophyletic-groups.Rmdusingknitr::rmarkdownon Jan 15 2025.

Last update: 2023-01-10
Started: 2023-01-10

Simple_example

Rendered fromSimple_example.Rmdusingknitr::rmarkdownon Jan 15 2025.

Last update: 2023-01-10
Started: 2023-01-10

Speed comparisons

Rendered fromspeed.Rmdusingknitr::rmarkdownon Jan 15 2025.

Last update: 2023-01-10
Started: 2023-01-03