Package: rtrees 1.0.3

rtrees: Deriving Phylogenies from Synthesis Trees

To facilitate generating phylogenies from synthesis trees.

Authors:Daijiang Li [aut, cre]

rtrees_1.0.3.tar.gz
rtrees_1.0.3.zip(r-4.5)rtrees_1.0.3.zip(r-4.4)rtrees_1.0.3.zip(r-4.3)
rtrees_1.0.3.tgz(r-4.5-any)rtrees_1.0.3.tgz(r-4.4-any)rtrees_1.0.3.tgz(r-4.3-any)
rtrees_1.0.3.tar.gz(r-4.5-noble)rtrees_1.0.3.tar.gz(r-4.4-noble)
rtrees_1.0.3.tgz(r-4.4-emscripten)rtrees_1.0.3.tgz(r-4.3-emscripten)
rtrees.pdf |rtrees.html✨
rtrees/json (API)

# Install 'rtrees' in R:
install.packages('rtrees', repos = c('https://daijiang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/daijiang/rtrees/issues

Pkgdown site:https://daijiang.github.io

Datasets:

On CRAN:

Conda:

phylogenetic-trees

5.67 score 32 stars 73 scripts 7 exports 45 dependencies

Last updated 9 months agofrom:dde573355d. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 14 2025
R-4.5-winNOTEFeb 14 2025
R-4.5-macNOTEFeb 14 2025
R-4.5-linuxNOTEFeb 14 2025
R-4.4-winNOTEFeb 14 2025
R-4.4-macNOTEFeb 14 2025
R-4.3-winNOTEFeb 14 2025
R-4.3-macNOTEFeb 14 2025

Exports:add_root_infobind_tipget_graft_statusget_one_treeget_treerm_starssp_list_df

Dependencies:apecastorclicodetoolscpp11data.tabledigestdplyrfansifastmatchfsfurrrfuturegenericsglobalsgluejsonlitelatticelazyevallifecyclelistenvmagrittrMatrixmegatreesnaturalsortnlmeparallellypillarpkgconfigpurrrR6RcppRcppEigenrlangRSpectrastringistringrtibbletidyrtidyselecttidytreeutf8vctrswithryulab.utils

Grafting Scenarios

Rendered fromgrafting_scenarios.Rmdusingknitr::rmarkdownon Feb 14 2025.

Last update: 2023-01-10
Started: 2023-01-10

Non-monophyletic genera

Rendered fromNon-monophyletic-groups.Rmdusingknitr::rmarkdownon Feb 14 2025.

Last update: 2023-01-10
Started: 2023-01-10

Simple_example

Rendered fromSimple_example.Rmdusingknitr::rmarkdownon Feb 14 2025.

Last update: 2023-01-10
Started: 2023-01-10

Speed comparisons

Rendered fromspeed.Rmdusingknitr::rmarkdownon Feb 14 2025.

Last update: 2023-01-10
Started: 2023-01-03