To cite package ‘phyr’ in publications use:

Ives A, Dinnage R, Nell LA, Helmus M, Li D (2026). phyr: Model Based Phylogenetic Analysis. R package version 1.2.1, https://github.com/daijiang/phyr.

Corresponding BibTeX entry:

  @Manual{,
    title = {phyr: Model Based Phylogenetic Analysis},
    author = {Anthony Ives and Russell Dinnage and Lucas A. Nell and
      Matthew Helmus and Daijiang Li},
    year = {2026},
    note = {R package version 1.2.1},
    url = {https://github.com/daijiang/phyr},
  }