Package: megatrees 0.1.3
megatrees: Subsets of randomly selected phylogenies from existing mega-phylogenies
There are an increasing number of mega-phylogenies available nowadays, with many of them being sets of thousands of posterior distribution phylogenies. For ecological studies, we may need to randomly select many such posterior phylogeneies to conduct analyses. This data package serves this purpose by providing a small number (100) of randomly selected posterior phylogenies (if available) so that we can readily use them for our downstream analyses without repeating the downloading and selecting processes.
Authors:
megatrees_0.1.3.tar.gz
megatrees_0.1.3.zip(r-4.5)megatrees_0.1.3.zip(r-4.4)megatrees_0.1.3.zip(r-4.3)
megatrees_0.1.3.tgz(r-4.5-any)megatrees_0.1.3.tgz(r-4.4-any)megatrees_0.1.3.tgz(r-4.3-any)
megatrees_0.1.3.tar.gz(r-4.5-noble)megatrees_0.1.3.tar.gz(r-4.4-noble)
megatrees_0.1.3.tgz(r-4.4-emscripten)megatrees_0.1.3.tgz(r-4.3-emscripten)
megatrees.pdf |megatrees.html✨
megatrees/json (API)
| # Install 'megatrees' in R: |
| install.packages('megatrees', repos = c('https://daijiang.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/daijiang/megatrees/issues
- tree_amphibian_n100 - 100 randomly selected Mega-tree of Amphibians from VertLife.
- tree_bee - The Maximum Likely Mega-tree of Bees from Bee Tree of Life
- tree_bee_n100 - 100 randomly selected Mega-tree of Bees from Bee Tree of Life
- tree_bird_n100 - 100 randomly selected Mega-tree of Birds from Bird Tree.
- tree_butterfly - Tree of 2244 butterfly species
- tree_fish_12k - Mega-tree of 11638 Fish from The Fish Tree of Life
- tree_fish_32k_n50 - 50 Mega-tree of 31516 Fish from The Fish Tree of Life
- tree_mammal_n100_phylacine - 100 randomly selected Mega-tree of Mammals from PHYLACINE V1.2.
- tree_mammal_n100_vertlife - 100 randomly selected Mega-tree of Mammals from VertLife.
- tree_plant_otl - Mega-tree of Plants based on Open Tree of Life
- tree_reptile_n100 - 100 randomly selected Mega-tree of Reptiles (Squamates) from VertLife.
- tree_shark_ray_n100 - 100 randomly selected Mega-tree of Sharks, Rays, and Chimaeras from VertLife.
Last updated 2 months agofrom:b4ecd2e69b. Checks:8 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 11 2025 |
| R-4.5-win | OK | Feb 11 2025 |
| R-4.5-mac | OK | Feb 11 2025 |
| R-4.5-linux | OK | Feb 11 2025 |
| R-4.4-win | OK | Feb 11 2025 |
| R-4.4-mac | OK | Feb 11 2025 |
| R-4.3-win | OK | Feb 11 2025 |
| R-4.3-mac | OK | Feb 11 2025 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| 100 randomly selected Mega-tree of Amphibians from VertLife. | tree_amphibian_n100 |
| The Maximum Likely Mega-tree of Bees from Bee Tree of Life | tree_bee |
| 100 randomly selected Mega-tree of Bees from Bee Tree of Life | tree_bee_n100 |
| 100 randomly selected Mega-tree of Birds from Bird Tree. | tree_bird_n100 |
| Tree of 2244 butterfly species | tree_butterfly |
| Mega-tree of 11638 Fish from The Fish Tree of Life | tree_fish_12k |
| 50 Mega-tree of 31516 Fish from The Fish Tree of Life | tree_fish_32k_n50 |
| 100 randomly selected Mega-tree of Mammals from PHYLACINE V1.2. | tree_mammal_n100_phylacine |
| 100 randomly selected Mega-tree of Mammals from VertLife. | tree_mammal_n100_vertlife |
| Mega-tree of Plants based on Open Tree of Life | tree_plant_otl |
| 100 randomly selected Mega-tree of Reptiles (Squamates) from VertLife. | tree_reptile_n100 |
| 100 randomly selected Mega-tree of Sharks, Rays, and Chimaeras from VertLife. | tree_shark_ray_n100 |
